PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 188aa    MW: 20062.5 Da    PI: 6.6555
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027676genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.56.3e-4516114199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el++++
  Lus10027676  16 PCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDAAN 113
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  Lus10027676 114 A 114
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089128.03215116IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-4416113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAASSSSTST NSYNSPCAAC KFLRRKCMPG CIFAPYFPPE EPHKFANVHK IFGASNVTKL  60
LNELLPHQRE DAVNSLAYEA EARVRDPVYG CVGAISFLQR QVHRLQKELD AANADLIRFA  120
CNGADTTTLP PVVGSRPPVF GDPSITTRRP YVGPNPAGLP SFPYGPDLPW DDDDHDNNGG  180
GGGGGGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138269.11e-83PREDICTED: protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML48e-79LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A0A0LU811e-83A0A0A0LU81_CUCSA; Uncharacterized protein
STRINGGLYMA06G18861.18e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.43e-72LBD family protein